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<h3>Blueberry QuickLoad for Integrated Genome Browser</h3>
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This site contains data files formatted for visualization in Integrated Genome Browser, a freely available, Java-based, desktop genome browser.
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Data are from two assemblies of a diploid highbush blueberry Vaccinium corymbosum.
<p>
The first assembly was released in May of 2013 and is described in
<a href="http://www.ncbi.nlm.nih.gov/pubmed/25830017">RNA-Seq analysis and annotation of a draft blueberry genome assembly 
identifies candidate genes involved in fruit ripening, biosynthesis of 
bioactive compounds, and stage-specific alternative splicing
</a> by Vikas Gupta, April D. Estrada (equal contributors) and co-authors from the <a href="http://www.lorainelab.org">Loraine Lab</a>, the <a href="http://plantsforhumanhealth.ncsu.edu/">Plants for Human Health Institute</a>, and the <a href="http://carb.au.dk/">Centre for Carbohydrate Recognition and Signaling</a>. 
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The second assembly was released in August 2015 but has not been annotated. For more information, contact Rob Reid.
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<h4>How to view the data in IGB</h4>
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1. Download and install IGB. Go to <a href="http://www.bioviz.org/igb">BioViz.org</a> and click <b>Download</b>. 
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2. Once IGB starts, click the blueberry image on the IGB start screen. The published, 2013 assembly will load. 
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3. Wait for gene models to load. It may take about a minute, depending on your network connection.
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<p>To view other data sets (e.g., blueberry RNA-Seq data) open the folders in the left side of the <b>Data Access</b> tab, select data sets, and zoom in using sliders or zoom buttons. To load data after selecting data sets, click the <b>Load Data</b> button at the top right of IGB.
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To learn more about IGB and how to use it, click the <b>Help</b> menu, which links to the User's Guide, tutorials, and other resources for using IGB.
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[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[DIR]V_corymbosum_Aug_2015/23-Dec-2015 11:22 - Blueberry Aug 2015 assembly
[DIR]V_corymbosum_scaffold_May_2013/13-Apr-2015 13:11 - Blueberry May 2013 assembly
[TXT]contents.txt06-Aug-2017 08:33 92 Available genome assemblies and their titles
[IMG]favicon.ico16-Jul-2013 17:04 5.3KIcon IGB displays for this data source in the Data Access tab
Apache/2.2.15 (Red Hat) Server at www.igbquickload.org Port 80