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<h1>Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) files were downloaded from the UCSC Genome
Bioinformatics Table Browser and Ensembl Biomart Metazoa Database. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named A_gambiae_Oct_2006.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
A_gambiae_Oct_2006.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]annots.xml2023-06-16 13:18 393 Annotation and data file list
[ ]A_gambiae_Oct_2006_ensGene.bed.gz.tbi2023-06-16 13:18 31KTabix index file
[TXT]genome.txt2023-06-16 13:18 182KChromosome lengths and assembly information
[ ]A_gambiae_Oct_2006_ensGene.bed.gz2023-06-16 13:18 721KAnnotation or junction file
[ ]A_gambiae_Oct_2006.2bit2023-06-16 13:18 65MSequence data in blat 2bit format
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