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<h1>Homo sapiens (Dec 2013) human being (GRCh38/hg38) genome assembly</h1>
<p>
The files listed below are formatted for visualization in the Integrated Genome
Browser, available from <a href="https://bioviz.org">BioViz.org</a>.
</p>
<p>
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome
Bioinformatics Table Browser. Each file is named for its corresponding table in the
UCSC Genome database. See the <a href="annots.xml">annots.xml</a> meta-data file in
this directory for details.
</p>
<p>
Files with extension .gz were compressed and indexed using bgzip and
tabix tools from <a href="https://www.htslib.org">htslib.org</a>.
</p>
<p>
The file named H_sapiens_Dec_2013.2bit contains sequence data and is from the UCSC Genome
Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file
<a href="genome.txt">genome.txt</a> lists sequences and their sizes and was made from 
H_sapiens_Dec_2013.2bit sequence file using twoBitInfo.
</p>
<p>
Both twoBitInfo and twoBitToFa are
available from <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
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[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[   ]H_sapiens_Dec_2013.2bit26-Mar-2019 12:38 809MSequence data in blat 2bit format
[   ]H_sapiens_Dec_2013_all_est.psl.gz30-Nov-2020 10:31 415MPSL (alignments) blat output file
[   ]H_sapiens_Dec_2013_all_est.psl.gz.tbi30-Nov-2020 10:31 1.4MTabix index file
[   ]H_sapiens_Dec_2013_all_mrna.psl.gz30-Nov-2020 10:31 164MPSL (alignments) blat output file
[   ]H_sapiens_Dec_2013_all_mrna.psl.gz.tbi30-Nov-2020 10:31 1.6MTabix index file
[   ]H_sapiens_Dec_2013_ncbiRefSeq.bed.gz30-Nov-2020 10:31 7.0MAnnotation or junction file
[   ]H_sapiens_Dec_2013_ncbiRefSeq.bed.gz.tbi30-Nov-2020 10:31 158KTabix index file
[   ]H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz30-Nov-2020 10:31 3.7MAnnotation or junction file
[   ]H_sapiens_Dec_2013_ncbiRefSeqCurated.bed.gz.tbi30-Nov-2020 10:31 127KTabix index file
[   ]H_sapiens_Dec_2013_refGene.bed.gz30-Nov-2020 10:31 3.9MData from UCSC refGene table
[   ]H_sapiens_Dec_2013_refGene.bed.gz.tbi30-Nov-2020 10:31 126KTabix index file
[   ]H_sapiens_Dec_2013_snp153Common.bed.gz30-Nov-2020 10:31 153MAnnotation or junction file
[   ]H_sapiens_Dec_2013_snp153Common.bed.gz.tbi30-Nov-2020 10:31 1.6MTabix index file
[DIR]UCSCTracks/27-Sep-2018 13:37 -  
[TXT]annots.xml23-Sep-2021 09:43 4.0KAnnotation and data file list
[   ]cytoBand.cyt27-Sep-2018 13:40 44KCytobands file
[TXT]genome.txt26-Mar-2019 12:38 15KChromosome lengths and assembly information
[   ]hg38-blacklist.v2.bed.gz23-Sep-2021 09:43 5.8KAnnotation or junction file
[   ]hg38-blacklist.v2.bed.gz.tbi23-Sep-2021 09:43 10KTabix index file
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