strapdown: '/styling/strapdown/v/0.2/strapdown.js'};
<html> <title>Integrated Genome Browser QuickLoad Site</title> <body> <h1>Welcome to IGB Quickload</h1> <p> Data available here are configured for visualization in the <a href="https://bioviz.org">Integrated Genome Browser</a>. </p> <h2>About Quickload</h2> <p> A Quickload site is a simple system of directories, sequence files, and annotation files formatted for visualization in Integrated Genome Browser. It's a convenient way to share data sets with other labs and with the public. </p> <h2>About this Web site</h2> <p> This site is a checked-out copy of this <a href="https://svn.bioviz.org/viewvc/genomes/quickload/">subversion repository</a>. </p> <h2>How to replicate this Web site</h2> <p>Set up a host with the Apache2 Web server. (It may work with other servers, too. We have never tested that.)</p> <p> The Quickload data require around 60 Gb or less. </p> <p>Install svn and check out the repository with a read-only user:</p> <p>`svn co --username=guest co https://svn.bioviz.org/repos/genomes/quickload`</p> <p>Place the checkedout-repository in your htdocs directory (DocumentRoot)</p> <p>Configure your Web server to allow fancy directory listings and configurations from .htaccess files residing alongside content.</p> <p>To support IGB 9.1.4 and lower, add `T_aestivum_Aug_2018.2bit` to directory `quickload/T_aestivum_Aug_2018`.</p> <h2>Test it with Integrated Genome Browser</h2> <p>Open Integrated Genome Browser and select <B>Preferences</B> from the <B>File</B> menu. Select the <B>Data Sources</B> tab. Add your new site as a new Quickload Data Source. The folder contain the file "contents.txt" is the Quickload root directory. See examples within IGB itself.</p> <hr/> </body> </html>
Name | Last modified | Size | Description | |
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Parent Directory | - | |||
A_gambiae_Feb_2003/ | 11-Nov-2018 20:05 | - | Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2) | |
A_gambiae_Oct_2006/ | 10-Sep-2019 21:30 | - | Anopheles gambiae (Oct 2006) mosquito (AgamP3/anoGam3) | |
A_lyrata_Apr_2011/ | 11-Nov-2018 18:11 | - | Arabidopsis lyrata JGI v1.0 assembly | |
A_melanoleuca_Dec_2009/ | 11-Nov-2018 18:52 | - | Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0) | |
A_mellifera_Jan_2005/ | 11-Nov-2018 18:33 | - | Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 ) | |
A_rostrata_Oct_2016/ | 10-Sep-2019 21:30 | - | Anguilla rostrata | |
A_thaliana_Apr_2008/ | 10-Sep-2019 21:29 | - | Arabidopsis thaliana TAIR8 genome assembly | |
A_thaliana_Jun_2009/ | 11-Nov-2018 18:41 | - | Arabidopsis thaliana TAIR9, TAIR10 genome assembly | |
B_distachyon_Aug_2010/ | 11-Nov-2018 18:11 | - | Brachypodium distachyon (a model grass) JGI v1.0 8x assembly | |
B_taurus_Jun_2014/ | 10-Dec-2018 20:19 | - | Bos taurus (Jun 2014) cow (UMD_3.1.1/bosTau8) | |
B_taurus_Oct_2011/ | 11-Nov-2018 19:21 | - | Bos taurus (cow) bosTau7 Oct 2011 assembly | |
C_albicans_SC5314_Jun_2014/ | 19-Mar-2019 00:10 | - | Candida albicans | |
C_albicans_SC5314_Nov_2008/ | 19-Mar-2019 00:10 | - | Candida albicans | |
C_albicans_WO-1_Dec_2013/ | 10-Sep-2019 21:30 | - | Candida albicans WO-1 (Dec 2013) | |
C_albicans_WO-1_Jul_2010/ | 10-Sep-2019 21:30 | - | Candida albicans | |
C_elegans_Feb_2013/ | 23-Sep-2021 14:09 | - | C. elegans Feb 2013 (WBcel235/ce11) | |
C_elegans_May_2008/ | 11-Nov-2018 19:56 | - | C. elegans May 2008 WS190/ce6 | |
C_elegans_Oct_2010/ | 23-Sep-2021 14:09 | - | C. elegans Oct 2010 (WS220/ce10) | |
C_papaya_Aug_2010/ | 11-Nov-2018 18:11 | - | Papaya | |
C_porcellus_Feb_2008/ | 11-Nov-2018 18:11 | - | Cavia porcellus (Feb 2008) guinea pig (cavPor3) | |
C_reinhardtii_Nov_2010/ | 11-Nov-2018 18:07 | - | Chlamy (an algal genome) | |
C_sabaeus_Mar_2014/ | 19-Mar-2019 00:11 | - | Chlorocebus sabaeus (Mar 2014) African green monkey (Chlorocebus_sabaeus 1.1/chlSab2) | |
C_sativa_CBDRx_Dec_2018/ | 24-Sep-2020 04:16 | - | Cannabis sativa CBDRx Dec 2018 | |
C_sativa_DH55_Apr_2014/ | 11-Nov-2018 19:09 | - | Camelina, false flax, an oilseed crop | |
D_discoideum_Ax4_May_2009/ | 11-Nov-2018 18:25 | - | Slime mold | |
D_magna_Apr_2010/ | 10-Sep-2019 21:29 | - | Daphnia magna Xinb3 v2.4 (Apr 2010) water flea | |
D_magna_Jan_2019/ | 10-Sep-2019 21:30 | - | Daphnia magna SK v1.0 (Jan 2019) water flea | |
D_melanogaster_Apr_2006/ | 23-Sep-2021 14:09 | - | Drosophila melanogaster (Apr 2006) fruit fly (dm3/BDGP R5) | |
D_melanogaster_Aug_2014/ | 23-Nov-2021 15:28 | - | Drosophila melanogaster (Aug 2014) fruit fly (BDGP Release 6 + ISO1 MT/dm6) | |
D_melanogaster_Jul_2014/ | 10-Sep-2019 21:30 | - | Drosophila melanogaster (July 2014) fruit fly (dmel_r6.03_FB2014_06) | |
D_pulex_Feb_2011/ | 10-Sep-2019 21:30 | - | Daphnia pulex TCO v1.0 (Feb 2011) water flea | |
D_pulex_Sep_2016/ | 10-Sep-2019 21:30 | - | Daphnia pulex PA42 v3.0 (Sep 2016) water flea | |
D_rerio_Jul_2010/ | 19-Mar-2019 00:10 | - | Danio rerio (Jul 2010) zebrafish (danRer7/Zv9) | |
D_rerio_May_2017/ | 21-Dec-2018 18:19 | - | Danio rerio (May 2017) zebrafish (GRCz11/danRer11) | |
E_caballus_Sep_2007/ | 11-Nov-2018 18:47 | - | Equus caballus (Sep 2007) horse (equCab2) | |
E_coli_K12-MG1655_Jan_2012/ | 11-Nov-2018 19:40 | - | Escherichia coli K12-MG1655 | |
F_albicollis_Jun_2013/ | 31-Mar-2021 21:54 | - | Ficedula albicollis (Jun 2013) collared flycatcher (FicAlb1.5) | |
F_catus_Sep_2011/ | 11-Nov-2018 18:08 | - | Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5) | |
F_vesca_Sep_2011/ | 11-Nov-2018 19:08 | - | Fragaria vesca (woodland strawberry) v1.1 | |
G_gallus_Nov_2011/ | 11-Nov-2018 18:24 | - | Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0) | |
G_max_Aug_2010/ | 11-Nov-2018 18:07 | - | Soybean Glyma1 | |
G_max_Jan_2014/ | 11-Nov-2018 19:11 | - | Soybean Glyma2 | |
H_sapiens_Dec_2013/ | 23-Sep-2021 14:09 | - | Homo sapiens hg38 (Genome Reference Consortium GRCh38) | |
H_sapiens_Feb_2009/ | 23-Sep-2021 14:09 | - | Homo sapiens hg19 (Genome Reference Consortium GRCh37) | |
H_sapiens_Mar_2006/ | 11-Nov-2018 18:21 | - | Homo sapiens hg18 (Genome Reference Consortium GRCh36) | |
H_sapiens_May_2004/ | 11-Nov-2018 20:18 | - | Homo sapiens hg17 (Genome Reference Consortium GRCh35) | |
L_africana_Jul_2009/ | 11-Nov-2018 19:34 | - | Loxodonta africana (Jul 2009) elephant (loxAfr3) | |
L_passim_Apr_2014/ | 09-Mar-2021 18:48 | - | Lotmaria passim, strain SF, Crithidia mellificae strain SF, whole genome shotgun sequencing project | |
M_acuminata_DH_Pahang_Jan_2016/ | 11-Nov-2018 19:35 | - | Musa acuminata DH Pahang (Jan 2016) banana (v2) | |
M_domestica_Borkh_Jun_2017/ | 11-Nov-2018 19:24 | - | Malus domestica (Jun 2017) apple | |
M_musculus_Aug_2005/ | 11-Nov-2018 18:09 | - | Mus musculus (Aug 2005) mouse (NCBI35/mm7) | |
M_musculus_Dec_2011/ | 23-Sep-2021 14:09 | - | Mus musculus (Dec 2011) mouse (GRCm38/mm10) | |
M_musculus_Feb_2006/ | 11-Nov-2018 19:07 | - | Mus musculus (Feb 2006) mouse (NCBI36/mm8) | |
M_musculus_Jul_2007/ | 11-Nov-2018 18:15 | - | Mus musculus (Jul 2007) mouse (NCBI37/mm9) | |
M_truncatula_Mar_2009/ | 11-Nov-2018 18:41 | - | Medicago truncatula | |
N_vectensis_Jun_2007/ | 11-Nov-2018 19:34 | - | Nematostella vectensis, starlet sea anemone | |
O_aries_Feb_2010/ | 11-Nov-2018 19:27 | - | Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1) | |
O_sativa_japonica_Jun_2009/ | 11-Nov-2018 19:24 | - | Rice, japonic variety | |
O_sativa_japonica_Oct_2011/ | 11-Nov-2018 20:12 | - | Rice, japonic variety Os-Nipponbare-Reference-IRGSP-1.0 assembly | |
P_patens_Jan_2008/ | 11-Nov-2018 19:36 | - | Physcomitrella patens (moss) | |
P_patens_Jan_2018/ | 09-Mar-2021 18:48 | - | Physcomitrella patens (moss) v3.3 | |
P_persica_Apr_2010/ | 11-Nov-2018 18:11 | - | Peach v1 genome assembly | |
P_trichocarpa_Aug_2012/ | 11-Nov-2018 20:12 | - | Black cottonwood (poplar) | |
P_trichocarpa_Jan_2010/ | 11-Nov-2018 18:42 | - | Black cottonwood (poplar) | |
P_troglodytes_Oct_2010/ | 11-Nov-2018 18:40 | - | Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3) | |
R_communis_May_2008/ | 11-Nov-2018 19:11 | - | Castor bean | |
R_norvegicus_Jul_2014/ | 11-Nov-2018 18:31 | - | Rattus norvegicus (Jul 2014) rat (RGSC 6.0/rn6) | |
R_norvegicus_Mar_2012/ | 10-Dec-2018 20:18 | - | Rattus norvegicus (Mar 2012) rat (RGSC 5.0/rn5) | |
S_bicolor_Jan_2009/ | 11-Nov-2018 18:11 | - | Sorghum bicolor | |
S_bicolor_Jun_2013/ | 11-Nov-2018 19:22 | - | Sorghum bicolor | |
S_cerevisiae_Apr_2011/ | 16-Feb-2020 05:33 | - | S. cerevisiae strain S288C (Apr 2011) budding yeast (sacCer3) | |
S_cerevisiae_Jun_2008/ | 11-Nov-2018 19:08 | - | S. cerevisiae strain S288C (Jun 2008) budding yeast (sacCer2) | |
S_lycopersicum_Feb_2014/ | 11-Nov-2018 18:25 | - | Solanum lycopersicum (Feb 2014) tomato (SL2.50) | |
S_lycopersicum_Feb_2017/ | 24-Sep-2020 04:16 | - | Solanum lycopersicum (Feb 2017) tomato (SL3.0) | |
S_lycopersicum_Jun_2022/ | 01-Mar-2023 15:32 | - | Solanum lycopersicum (Jun 2022) tomato (SL5.0) | |
S_lycopersicum_May_2012/ | 11-Nov-2018 18:53 | - | Solanum lycopersicum (May 2012) tomato (SL2.40) | |
S_lycopersicum_Sep_2019/ | 24-Sep-2020 04:16 | - | Solanum lycopersicum (Sep 2019) tomato (SL4.0) | |
S_pombe_May_2012/ | 11-Nov-2018 19:23 | - | S. pombe (May 2012) fission yeast | |
S_tuberosum_DM_Jul_2011/ | 11-Nov-2018 18:35 | - | Solanum tuberosum Group Phureja clone DM1-3 (potato) v4.03 | |
T_aestivum_Aug_2018/ | 28-Sep-2020 21:12 | - | Triticum aestivum (IWGSC v1) | |
T_castaneum_Mar_2008/ | 11-Nov-2018 19:00 | - | Tribolium castaneum (March 2008) red flour beetle | |
T_kodakaraensis_KOD1_May_2004/ | 11-Nov-2018 19:11 | - | Thermococcus kodakaraensis | |
T_parvula_May_2012/ | 11-Nov-2018 18:11 | - | Thellungiella parvula (salt cress) v2, May 2012 | |
T_rubripes_Oct_2011/ | 11-Nov-2018 19:41 | - | Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3) | |
V_carteri_Jul_2010/ | 11-Nov-2018 18:33 | - | Volvox | |
V_vinifera_Mar_2010/ | 11-Nov-2018 18:07 | - | Wine grape 12x assembly | |
X_tropicalis_Jul_2016/ | 16-Feb-2020 04:35 | - | Xenopus tropicalis JGI 9.1/xenTro9 | |
X_tropicalis_Nov_2009/ | 11-Nov-2018 19:15 | - | Xenopus tropicalis JGI 4.2/xenTro3 | |
Y_lipolytica_CLIB122_Jul_2004/ | 11-Nov-2018 18:09 | - | Yarrowia lipolytica CLIB122 (Jul 2004) Assembly GCA_000002525.2 | |
Y_lipolytica_PO1f_May_2014/ | 11-Nov-2018 20:05 | - | Yarrowia lipolytica PO1f (May 2014) Assembly GCA_000590845.2 | |
Y_lipolytica_WSH-Z06_Mar_2014/ | 11-Nov-2018 18:35 | - | Yarrowia lipolytica WSH-Z06 (Mar 2014) Assembly GCA_000613155.1 | |
Z_mays_B73_Mar_2010/ | 11-Nov-2018 19:40 | - | Zea mays B73 RefGen_v2 assembly | |
contents.txt | 06-Jul-2022 12:31 | 6.0K | Available genome assemblies and their titles | |
favicon.ico | 11-Nov-2018 18:10 | 7.1K | Icon IGB displays for this data source in the Data Access tab | |
species.txt | 24-Sep-2020 04:16 | 302 | Taxonomic and common names for species, shown in IGB species menu | |
synonyms.txt | 10-Sep-2019 21:30 | 379 | IGB synonym file |