Welcome to IGBQuickload

Welcome to the main Integrated Genome Browser QuickLoad site, hosted at the University of North Carolina at Charlotte.

Data available here are configured for visualization in the Integrated Genome Browser.

About QuickLoad

A QuickLoad site is a simple system of directories, sequence and other data files designed for visualization in Integrated Genome Browser. It's a convenient way to share data sets with other labs and with the public. For more information, see the IGB User's Guide: Creating QuickLoad Sites.

All files, except RNA-Seq data, ChIP-Seq data, some sequence data, synonyms.txt, and species.txt, are version controlled in publicly-accessible subversion repository https://svn.transvar.org/repos/genomes/trunk/pub/quickload. Species.txt and synonyms.txt are from the IGB repository hosted at SourceForge.net.

 Name                           Last modified      Size  Description
 Parent Directory                                    -   
 A_gambiae_Feb_2003/            07-Nov-2012 12:38    -   Anopheles gambiae (Feb 2003) mosquito (anoGam1/IAGP v.MOZ2)
 A_lyrata_Apr_2011/             05-Nov-2012 11:43    -   Arabidopsis lyrata JGI v1.0 assembly
 A_melanoleuca_Dec_2009/        22-Apr-2013 12:38    -   Ailuropoda melanoleuca (Dec 2009) giant panda (ailMel1/BGI-Shenzhen AilMel 1.0)
 A_mellifera_Jan_2005/          23-Oct-2012 00:44    -   Apis mellifera (honeybee) Jan 2005 (apiMel2/Baylor College of Medicine HGSC v.Amel_2.0 )
 A_thaliana_Apr_2008/           05-Nov-2012 11:43    -   Arabidopsis thaliana TAIR8 genome assembly
 A_thaliana_Jan_2004/           21-Jun-2012 14:25    -   Arabidopsis thaliana TIGR5 genome assembly
 A_thaliana_Jun_2009/           22-Apr-2013 12:38    -   Arabidopsis thaliana TAIR9, TAIR10 genome assembly
 B_distachyon_Aug_2010/         24-Nov-2012 08:08    -   Brachypodium distachyon (a model grass) JGI v1.0 8x assembly
 B_taurus_Oct_2011/             23-Oct-2012 10:23    -   Bos taurus (cow) bosTau7 Oct 2011 assembly
 C_albicans_SC5314_Nov_2008/    07-Dec-2011 12:31    -   Candida albicans
 C_albicans_WO-1_Jul_2010/      07-Dec-2011 09:18    -   Candida albicans
 C_elegans_May_2008/            23-Aug-2012 16:28    -   C. elegans May 2008 WS190/ce6
 C_elegans_Oct_2010/            24-Nov-2012 08:09    -   C. elegans Oct 2010 (WS140/ce10)
 C_papaya_Aug_2010/             05-Nov-2012 11:43    -   Papaya
 C_porcellus_Feb_2008/          22-Oct-2012 23:57    -   Cavia porcellus (Feb 2008) guinea pig (cavPor3)
 C_reinhardtii_Nov_2010/        24-Nov-2012 08:08    -   Chlamy (an algal genome)
 D_discoideum_Ax4_May_2009/     13-Oct-2011 13:25    -   Slime mold
 D_melanogaster_Apr_2006/       22-Apr-2013 12:36    -   Drosophila melanogaster (Apr 2006) fruit fly (dm3/DBGP R5)
 D_rerio_Jul_2010/              13-Dec-2012 17:01    -   Danio rerio (Jul 2010) zebrafish (danRer7/Zv9)
 E_caballus_Sep_2007/           22-Oct-2012 23:11    -   Equus caballus (Sep 2007) horse (equCab2)
 E_coli_K12-MG1655_Jan_2012/    07-Nov-2012 12:38    -   Escherichia coli K12-MG1655
 F_catus_Dec_2008/              22-Oct-2012 22:41    -   Felis catus (Dec 2008) cat (NHGRI/GTB V17e/felCat4)
 F_catus_Sep_2011/              22-Apr-2013 14:07    -   
 F_vesca_Sep_2011/              04-Jul-2012 19:40    -   Fragaria vesca (woodland strawberry) v1.1
 G_gallus_Nov_2011/             22-Oct-2012 22:38    -   Gallus gallus (Nov 2011) chicken (galGal4/ICGC Gallus-gallus-4.0)
 G_max_Aug_2010/                05-Nov-2012 11:43    -   Soybean Glyma1
 H_sapiens_Feb_2009/            08-Nov-2012 14:19    -   Homo sapiens hg19 (Genome Reference Consortium GRCh37)
 L_africana_Jul_2009/           22-Apr-2013 12:41    -   Loxodonta africana (Jul 2009) elephant (loxAfr3)
 M_domestica_Oct_2006/          05-Nov-2012 11:43    -   Malus domestica (Oct 2006) opossum (monDom5)
 M_musculus_Dec_2011/           22-Apr-2013 14:10    -   Mus musculus (Dec 2011) mouse (GRCm38/mm10)
 M_musculus_Jul_2007/           02-Dec-2012 16:30    -   Mus musculus (Jul 2007) mouse (NCBI37/mm9)
 M_truncatula_Mar_2009/         05-Nov-2012 11:43    -   Medicago truncatula
 N_vectensis_Jun_2007/          05-Jun-2012 15:22    -   Nematostella vectensis, starlet sea anemone
 O_aries_Feb_2010/              22-Oct-2012 17:41    -   Ovis aries (Feb 2010) sheep (ISGC Ovis_aries_1/oviAri1)
 O_sativa_japonica_Jun_2009/    17-Feb-2012 14:00    -   Rice, japonic variety
 O_sativa_japonica_Oct_2011/    09-Aug-2012 17:08    -   Rice, japonic variety Os-Nipponbare-Reference-IRGSP-1.0 assembly
 P_patens_Jan_2008/             05-Nov-2012 11:43    -   Physcomitrella patens (moss)
 P_persica_Apr_2010/            05-Nov-2012 11:43    -   Peach v1 genome assembly
 P_trichocarpa_Aug_2012/        04-Mar-2013 16:50    -   
 P_trichocarpa_Jan_2010/        05-Nov-2012 11:43    -   Black cottonwood (poplar)
 P_troglodytes_Oct_2010/        22-Oct-2012 17:16    -   Pan troglodytes (Oct 2010) chimpanzee (CGSC 2.1.3/panTro3)
 R_communis_May_2008/           05-Nov-2012 11:43    -   Castor bean
 R_norvegicus_Mar_2012/         22-Oct-2012 17:02    -   Rattus Norvegicus (Mar 2012) rat (RGSC 5.0/rn5)
 S_bicolor_Jan_2009/            22-Apr-2013 14:13    -   Sorghum bicolor
 S_cerevisiae_Apr_2011/         03-Nov-2011 15:49    -   Budding yeast
 S_lycopersicum_May_2012/       23-Oct-2012 03:03    -   Solanum lycopersicum (May 2012) tomato (SL2.40)
 S_pombe_May_2012/              24-Nov-2012 08:08    -   S. pombe (May 2012) fission yeast
 T_kodakaraensis_KOD1_May_2004/ 08-May-2012 21:44    -   Thermococcus kodakaraensis
 T_parvula_May_2012/            02-Jan-2013 13:35    -   Thellungiella parvula (salt cress) v2, May 2012
 T_rubripes_Oct_2011/           23-Oct-2012 12:33    -   Takifugu rubripes (Oct 2011) Fugu (FUGU5/fr3)
 V_carteri_Jul_2010/            24-Nov-2012 08:09    -   Volvox
 V_vinifera_Mar_2010/           05-Nov-2012 11:43    -   Wine grape 12x assembly
 X_tropicalis_Nov_2009/         27-Apr-2012 16:42    -   Xenopus tropicalis JGI 4.2/xenTro3
 Z_mays_B73_Mar_2010/           26-Oct-2011 02:00    -   Zea mays B73 RefGen_v2 assembly
 contents.txt                   22-Apr-2013 12:41  3.4K  Available genome assemblies and their titles
 favicon.ico                    17-Apr-2011 11:52  7.1K  Icon IGB displays for this data source in the Data Access tab
 species.txt                    12-Dec-2012 11:06  8.5K  Taxonomic and common names for species, shown in IGB species menu
 synonyms.txt                   12-Dec-2012 11:06   14K  IGB synonym file