strapdown: '/styling/strapdown/v/0.2/strapdown.js'};
<h1>Physcomitrella patens (moss) January 2018 genome assembly</h1>
<body>
<p>
This directory contains annotation and sequence data files from the Physcomitrella patens genome version 3.3 genome released in January 2018. Files are formatted for visualization in <a href="https://bioviz.org">Integrated Genome Browser</a> (IGB). 
</p>
<p>
Files include:
</p>
<p>
<ul>
<li>
2bit file - sequence file in two-bit format, created using
faToTwoBit. 
When users click <b>Load Sequence</b> buttons, IGB retrieves sequence data from this file. 
</li>
<li>
annots.xml - meta-data file that lists available data sets and specifies how they will look once loaded into <a href="https://bioviz.org">Integrated Genome Browser</a>.
</li>
<li>genome.txt - meta-data file that lists genomic sequences and their sizes, created using twoBitInfo using the 2bit file.
</li>
<li>reference gene model annotations in bed or bed detail format, compressed using bgzip and indexed using tabix (See: <a href="http://bioinformatics.oxfordjournals.org/content/27/5/718">Tabix: fast retrieval of sequence features from generic TAB-delimited files</a> and <a href="http://genome.ucsc.edu/FAQ/FAQformat.html">http://genome.ucsc.edu/FAQ/FAQformat.html</a>.)
</li>
</ul>
</p>
<p>
<b>Note:</b> Gene model annotation files have been re-formatted for fast transfer over the internet and for visualization in IGB. Gene model annotation files use BED-detail format, which is the same as BED12 but contains two additional fields: field 13 contains the locus identifier and field 14 contains descriptive text.
</p>
<p>
To get faToTwoBit and twoBitInfo, visit <a href="http://hgdownload.cse.ucsc.edu/admin/exe/">http://hgdownload.cse.ucsc.edu/admin/exe/</a>.
</body>
[ICO]NameLast modifiedSizeDescription
[DIR]Parent Directory  -  
[   ]P_patens_Jan_2018.2bit05-Jan-2021 16:09 113MSequence data in blat 2bit format
[   ]P_patens_Jan_2018.bed.gz05-Jan-2021 16:09 3.7MAnnotation or junction file
[   ]P_patens_Jan_2018.bed.gz.tbi05-Jan-2021 16:09 72KTabix index file
[TXT]annots.xml05-Jan-2021 16:09 353 Annotation and data file list
[TXT]genome.txt03-Mar-2021 10:38 6.7KChromosome lengths and assembly information
Apache/2.2.15 (Red Hat) Server at www.igbquickload.org Port 80